| Jurnal Terakreditasi Nasional | 1 | ACTA MEDICA INDONESIANA | Perhimpunan Dokter Spesialis Penyakit Dalam Indonesia | S1 |
| 2 | Medical Journal of Indonesia | Universitas Indonesia | S1 |
| 3 | Indonesian Journal of Pharmacy | Universitas Gadjah Mada | S1 |
| 4 | Jurnal Respirologi Indonesia | Perhimpunan Dokter Paru Indonesia | S1 |
| 5 | The Indonesian Biomedical Journal | Prodia Education and Research Institute | S1 |
| 6 | Critical Care and Shock | Indonesian Society of Critical Care Medicine | S1 |
| 7 | Universa Medicina | Universitas Trisakti | S1 |
| 8 | Paediatrica Indonesiana: Indonesian Journal of Pediatrics and Perinatal Medicine | Ikatan Dokter Anak Indonesia | S1 |
| 9 | Bali Medical Journal | Bali Medical Journal | S1 |
| 10 | Makara Journal of Health Research | Universitas Indonesia | S2 |
| 11 | Jurnal Kesehatan Masyarakat | Universitas Negeri Semarang | S2 |
| 12 | Sari Pediatri | Ikatan Dokter Anak Indonesia | S2 |
| 13 | Kesmas: National Public Health Journal | Universitas Indonesia | S2 |
| 14 | Jurnal Gizi Klinik Indonesia | Universitas Gadjah Mada | S2 |
| 15 | Jurnal Kedokteran Brawijaya | Universitas Brawijaya | S2 |
| 16 | Aspirator: Jurnal Penelitian Penyakit Tular Vektor (Journal of Vector Borne Diseases Studies) | Kementrian Kesehatan | S2 |
| 17 | Dental Journal (Majalah Kedokteran Gigi) | Dental Journal (Majalah Kedokteran Gigi) | S2 |
| 18 | Majalah Kedokteran Bandung | Majalah Kedokteran Bandung | S2 |
| 19 | Jurnal Pendidikan Kedokteran Indonesia: The Indonesian Journal of Medical Education | Jurnal Pendidikan Kedokteran Indonesia | S2 |
| 20 | Berkala Ilmu Kedokteran (Journal of the Medical Sciences) | Berkala Ilmu Kedokteran (Journal of the Medical Sciences) | S2 |
| 21 | Journal of Biomedicine and Translational Research | Journal of Biomedicine and Translational Research | S2 |
| 22 | Global Medical and Health Communication | Global Medical and Health Communication | S2 |
| 23 | JMMR (Jurnal Medicoeticolegal dan Manajemen Rumah Sakit) | JMMR (Jurnal Medicoeticolegal dan Manajemen Rumah Sakit) | S2 |
| 24 | JKKI : Jurnal Kedokteran dan Kesehatan Indonesia | JKKI : Jurnal Kedokteran dan Kesehatan Indonesia | S2 |
| 25 | Journal of the Indonesian Medical Association : Majalah Kedokteran Indonesia | Journal of the Indonesian Medical Association : Majalah Kedokteran Indonesia | S2 |
| 26 | Majalah Kedokteran Gigi Indonesia | Majalah Kedokteran Gigi Indonesia | S2 |
| 27 | Makara Journal of Health Research | Universitas Indonesia | S2 |
| 28 | Jurnal Kebijakan Kesehatan Indonesia : JKKI | Universitas Gadjah Mada | S3 |
